miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125453679|gb|EL465373.1|EL465373 AAAAAAAGAAAAATGCGGAACTCAGTGGTAGCGTACAGCTTCCGCCATTTTCCCCCTTTAATGCACCGTTGTTCACTCCC
CTTGTTCTGCCTCAACCGTCATCCTCCGCTACCTTCACCATCCACCCTTCTCTTCAAAACCTCTTCATCATCATATTCAT
CATCATCATCATCATCGTCATCTTGCGTTCTAAATCCATTCAATTTCACGGGGAATTATCTGTTTCGTAAGATGGAGCGA
TACTGGTCAGGAAGTAGTGTCAACAAGAACAAAGGCATGGTGGAGCATTTGCAACGTTACGGAGTCATTCAGTCTAAAAA
AGTGGCTGAAGTAATGGAGACTGTTGATCGGGCGTTGTTTGTACCGGATGGATCCCCGGCCTATGAAGACAGTCCCATGT
CAATAGGTTTTAATGCCACAATTTCTGCACCTCATATGCATGCTACTTGTCTTCAGCTATTGGAGAAACACTTACAGCCC
GGGATGCATGCTTTAGATGTTGGTTCAGGAACGGGGTACTTGACGGCATGTTTTGCACTTATGGTTGGCCCACAGGGGCG
CACAATTGGCGTTGAGCATATTCCCGAGCTGGTTGCAATGTCTCTTAAGAATGTTGAAAAAAGTGCAGCTGCTCCATTAC
TCAAAGATGGATCTCTCGCCTTACATGTTGGTGATGGCAGAGAAGGGTGGCCAGAGTTTGCTCCTTATGATGCTATTCAT
GTTGGGGCAGCGGCTCCGGAAATTCCAAAGCCACTTATAGAACAGTTGAAACCAGGGGGAAGGTTGGTTATACCAGTCGG
TAACATATTTCAGGAACTGAAAGTTGTTGACAAAAACCAGGATGGTTCTGTGACTGTTCGTACCGAGACTTCAGTACGTT
ATGTCCCTCTCACAAGTAGGGAACCCAATTACC




Most similar to sp|Q42539|PIMT_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase
           OS=Arabidopsis thaliana GN=PCM PE=2 SV=3
          Length = 230

 Score =  358 bits (920), Expect = 2e-98
 Identities = 171/224 (76%), Positives = 199/224 (88%)
 Frame = +1

Query: 232 MERYWSGSSVNKNKGMVEHLQRYGVIQSKKVAEVMETVDRALFVPDGSPAYEDSPMSIGF 411
           M+++WS SS+NKNK MVE+LQ +G++ S +VA+ ME VDR +FV D S AY DSPMSIG+
Sbjct: 1   MKQFWSPSSINKNKAMVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSSAYVDSPMSIGY 60

Query: 412 NATISAPHMHATCLQLLEKHLQPGMHALDVGSGTGYLTACFALMVGPQGRTIGVEHIPEL 591
           N TISAPHMHA CLQLLEKHL+PGM  LDVGSGTGYLTACFA+MVG +GR IGVEHIPEL
Sbjct: 61  NVTISAPHMHAMCLQLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPEL 120

Query: 592 VAMSLKNVEKSAAAPLLKDGSLALHVGDGREGWPEFAPYDAIHVGAAAPEIPKPLIEQLK 771
           VA S+KN+E SAA+P LK+GSLA+HVGDGR+GW EFAPYDAIHVGAAAPEIP+ LI+QLK
Sbjct: 121 VASSVKNIEASAASPFLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLK 180

Query: 772 PGGRLVIPVGNIFQELKVVDKNQDGSVTVRTETSVRYVPLTSRE 903
           PGGRLVIPVGNIFQ+L+VVDKN DGSV+++ ETSVRYVPLTSRE
Sbjct: 181 PGGRLVIPVGNIFQDLQVVDKNSDGSVSIKDETSVRYVPLTSRE 224